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JCB
2002
111views more  JCB 2002»
14 years 11 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 3 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
DAC
2004
ACM
16 years 21 days ago
Automated energy/performance macromodeling of embedded software
Efficient energy and performance estimation of embedded software is a critical part of any system-level design flow. Macromodeling based estimation is an attempt to speed up estim...
Anish Muttreja, Anand Raghunathan, Srivaths Ravi, ...
DEBS
2010
ACM
15 years 2 months ago
Workload characterization for operator-based distributed stream processing applications
Operator-based programming languages provide an effective development model for large scale stream processing applications. A stream processing application consists of many runtim...
Xiaolan J. Zhang, Sujay Parekh, Bugra Gedik, Henri...
SC
2003
ACM
15 years 5 months ago
Fast Parallel Non-Contiguous File Access
Many applications of parallel I/O perform non-contiguous file accesses: instead of accessing a single (large) block of data in a file, a number of (smaller) blocks of data scatt...
Joachim Worringen, Jesper Larsson Träff, Hube...