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» A cluster validity framework for genome expression data
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BMCBI
2008
166views more  BMCBI 2008»
15 years 5 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
SGAI
2007
Springer
15 years 11 months ago
Metrics for Mining Multisets
Abstract. We propose a new class of distance measures (metrics) designed for multisets, both of which are a recurrent theme in many data mining applications. One particular instanc...
Walter A. Kosters, Jeroen F. J. Laros
ICDE
2009
IEEE
155views Database» more  ICDE 2009»
16 years 6 months ago
Finding Time-Lagged 3D Clusters
Existing 3D clustering algorithms on gene ? sample ? time expression data do not consider the time lags between correlated gene expression patterns. Besides, they either ignore the...
Xin Xu, Ying Lu, Kian-Lee Tan, Anthony K. H. Tung
NAR
2002
141views more  NAR 2002»
15 years 4 months ago
Co-expression pattern from DNA microarray experiments as a tool for operon prediction
The prediction of operons, the smallest unit of transcription in prokaryotes, is the first step towards reconstruction of a regulatory network at the whole genome level. Sequence ...
Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. ...
ISPA
2005
Springer
15 years 10 months ago
COMPACT: A Comparative Package for Clustering Assessment
Abstract. There exist numerous algorithms that cluster data-points from largescale genomic experiments such as sequencing, gene-expression and proteomics. Such algorithms may emplo...
Roy Varshavsky, Michal Linial, David Horn