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BMCBI
2005
104views more  BMCBI 2005»
14 years 9 months ago
Wildfire: distributed, Grid-enabled workflow construction and execution
Background: We observe two trends in bioinformatics: (i) analyses are increasing in complexity, often requiring several applications to be run as a workflow; and (ii) multiple CPU...
Francis Tang, Ching Lian Chua, Liang-Yoong Ho, Yun...
RIVF
2008
14 years 11 months ago
Speeding up subset seed algorithm for intensive protein sequence comparison
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
Van Hoa Nguyen, Dominique Lavenier
DLS
2005
122views Languages» more  DLS 2005»
14 years 11 months ago
Language constructs for context-oriented programming: an overview of ContextL
ContextL is an extension to the Common Lisp Object System that allows for Context-oriented Programming. It provides means to associate partial class and method definitions with l...
Pascal Costanza, Robert Hirschfeld
ECOOP
2008
Springer
14 years 11 months ago
On Validity of Program Transformations in the Java Memory Model
Abstract. We analyse the validity of several common program transformations in multi-threaded Java, as defined by the Java Memory Model (JMM) section of Chapter 17 of the Java Lang...
Jaroslav Sevcík, David Aspinall
BIOINFORMATICS
2006
135views more  BIOINFORMATICS 2006»
14 years 9 months ago
Effective similarity measures for expression profiles
It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
Golan Yona, William Dirks, Shafquat Rahman, David ...