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BMCBI
2010
113views more  BMCBI 2010»
13 years 6 months ago
Unifying generative and discriminative learning principles
Background: The recognition of functional binding sites in genomic DNA remains one of the fundamental challenges of genome research. During the last decades, a plethora of differe...
Jens Keilwagen, Jan Grau, Stefan Posch, Marc Stric...
BMCBI
2004
106views more  BMCBI 2004»
13 years 6 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...
ISPAN
1997
IEEE
13 years 10 months ago
RMESH Algorithms for Parallel String Matching
Abstract- String matching problem received much attention over the years due to its importance in various applications such as text/file comparison, DNA sequencing, search engines,...
Hsi-Chieh Lee, Fikret Erçal
BMCBI
2007
265views more  BMCBI 2007»
13 years 6 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
BMCBI
2008
77views more  BMCBI 2008»
13 years 6 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...