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» A constructive algorithm for realizing a distance matrix
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JCB
2002
108views more  JCB 2002»
13 years 6 months ago
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
This paper investigates the standard ordinary least-squares version 24 and the balanced version 20 of the minimum evolution principle. For the standard version, we provide a greedy...
Richard Desper, Olivier Gascuel
BMCBI
2006
150views more  BMCBI 2006»
13 years 6 months ago
Protein structure similarity from principle component correlation analysis
Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
Xiaobo Zhou, James Chou, Stephen T. C. Wong
BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 6 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
VLDB
2006
ACM
171views Database» more  VLDB 2006»
14 years 6 months ago
Grid-partition index: a hybrid method for nearest-neighbor queries in wireless location-based services
Abstract Traditional nearest-neighbor (NN) search is based on two basic indexing approaches: object-based indexing and solution-based indexing. The former is constructed based on t...
Baihua Zheng, Jianliang Xu, Wang-Chien Lee, Dik Lu...
TPHOL
2005
IEEE
13 years 12 months ago
A HOL Theory of Euclidean Space
We describe a formalization of the elementary algebra, topology and analysis of finite-dimensional Euclidean space in the HOL Light theorem prover. (Euclidean space is RN with the...
John Harrison