Background: Identification of differentially expressed genes is a typical objective when analyzing gene expression data. Recently, Bayesian hierarchical models have become increas...
Interconnect optimization for VLSI circuits has received wide attention. To model routing surfaces, multiple circuit layers are freabstracted as a single rectilinear plane, ignori...
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
The problems of dimension reduction and inference of statistical dependence are addressed by the modeling framework of learning gradients. The models we propose hold for Euclidean...
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...