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» A copula method for modeling directional dependence of genes
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JMLR
2010
125views more  JMLR 2010»
14 years 4 months ago
On utility of gene set signatures in gene expression-based cancer class prediction
Machine learning methods that can use additional knowledge in their inference process are central to the development of integrative bioinformatics. Inclusion of background knowled...
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Cu...
BMCBI
2005
127views more  BMCBI 2005»
14 years 9 months ago
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
COLING
2008
14 years 11 months ago
Japanese Dependency Parsing Using a Tournament Model
In Japanese dependency parsing, Kudo's relative preference-based method (Kudo and Matsumoto, 2005) outperforms both deterministic and probabilistic CKY-based parsing methods....
Masakazu Iwatate, Masayuki Asahara, Yuji Matsumoto
BMCBI
2007
140views more  BMCBI 2007»
14 years 9 months ago
From genes to functional classes in the study of biological systems
Background: With the popularisation of high-throughput techniques, the need for procedures that help in the biological interpretation of results has increased enormously. Recently...
Fátima Al-Shahrour, Leonardo Arbiza, Hern&a...
BMCBI
2005
140views more  BMCBI 2005»
14 years 9 months ago
Dissecting systems-wide data using mixture models: application to identify affected cellular processes
Background: Functional analysis of data from genome-scale experiments, such as microarrays, requires an extensive selection of differentially expressed genes. Under many condition...
J. Peter Svensson, Renée X. de Menezes, Ing...