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PADL
2005
Springer
15 years 3 months ago
Character-Based Cladistics and Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to us...
Daniel R. Brooks, Esra Erdem, James W. Minett, Don...
BMCBI
2007
133views more  BMCBI 2007»
14 years 9 months ago
Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data
Background: Gene expression measurements during the development of the fly Drosophila melanogaster are routinely used to find functional modules of temporally co-expressed genes. ...
Ivan G. Costa, Roland Krause, Lennart Opitz, Alexa...
NAR
2008
165views more  NAR 2008»
14 years 9 months ago
4DXpress: a database for cross-species expression pattern comparisons
In the major animal model species like mouse, fish or fly, detailed spatial information on gene expression over time can be acquired through whole mount in situ hybridization expe...
Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-D...
JAR
2007
72views more  JAR 2007»
14 years 9 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
IPPS
2006
IEEE
15 years 3 months ago
Algorithmic skeletons for stream programming in embedded heterogeneous parallel image processing applications
Algorithmic skeletons can be used to write architecture independent programs, shielding application developers from the details of a parallel implementation. In this paper, we pre...
Wouter Caarls, Pieter P. Jonker, Henk Corporaal