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» A factor model to analyze heterogeneity in gene expression
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EVOW
2010
Springer
15 years 4 months ago
Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions
DEODHAR, SUSHAMNA DEODHAR. Using Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions in Genetic Epidemiology. (Under the direction of Dr. Alison Motsinger-Re...
Sushamna Deodhar, Alison A. Motsinger-Reif
91
Voted
BMCBI
2006
92views more  BMCBI 2006»
14 years 9 months ago
Predicting survival outcomes using subsets of significant genes in prognostic marker studies with microarrays
Background: Genetic markers hold great promise for refining our ability to establish precise prognostic prediction for diseases. The development of comprehensive gene expression m...
Shigeyuki Matsui
BMCBI
2005
169views more  BMCBI 2005»
14 years 9 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
15 years 3 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou
RECOMB
2005
Springer
15 years 10 months ago
An Interaction-Dependent Model for Transcription Factor Binding
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...
Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli