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» A factor model to analyze heterogeneity in gene expression
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BIOADIT
2004
Springer
15 years 3 months ago
Analysis of Responses of Complex Bionetworks to Changes in Environmental Conditions
Abstract. The responses of flexible bionetworks to extreme environmental changes were studied in several microorganisms. Gene and metabolic networks markedly changed with osmotic ...
Hiroshi Shimizu, Takashi Hirasawa, Keisuke Nagahis...
BMCBI
2008
171views more  BMCBI 2008»
14 years 9 months ago
Fuzzy association rules for biological data analysis: A case study on yeast
Background: Last years' mapping of diverse genomes has generated huge amounts of biological data which are currently dispersed through many databases. Integration of the info...
Francisco J. Lopez, Armando Blanco, Fernando Garci...
CIBCB
2005
IEEE
15 years 3 months ago
Artificial Neural Network Analysis of DNA Microarray-based Prostate Cancer Recurrence
— DNA microarray-based gene expression profiles have been established for a variety of adult cancers. This paper addresses application of an artificial neural network (ANN) wit...
Leif E. Peterson, Mustafa Ozen, Halime Erdem, Andr...
79
Voted
BMCBI
2008
118views more  BMCBI 2008»
14 years 9 months ago
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Background: There is great interest in probing the temporal and spatial patterns of cytosine methylation states in genomes of a variety of organisms. It is hoped that this will sh...
Eyal Gruntman, Yijun Qi, R. Keith Slotkin, Ted Roe...
SDM
2012
SIAM
281views Data Mining» more  SDM 2012»
13 years 2 days ago
Contextual Collaborative Filtering via Hierarchical Matrix Factorization
Matrix factorization (MF) has been demonstrated to be one of the most competitive techniques for collaborative filtering. However, state-of-the-art MFs do not consider contextual...
ErHeng Zhong, Wei Fan, Qiang Yang