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» A factor model to analyze heterogeneity in gene expression
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BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison
Background: Candida albicans is a commonly encountered fungal pathogen in humans. The formation of biofilm is a major virulence factor in C. albicans pathogenesis and is related t...
Yu-Chao Wang, Chung-Yu Lan, Wen-Ping Hsieh, Luis A...
BIOCOMP
2006
14 years 11 months ago
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
RTSS
2007
IEEE
15 years 3 months ago
Composing Functional and State-Based Performance Models for Analyzing Heterogeneous Real-Time Systems
— We present a performance analysis technique for distributed real-time systems in a setting where certain components are modeled in a purely functional manner, while the remainin...
Linh T. X. Phan, Samarjit Chakraborty, P. S. Thiag...
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
A factor analysis model for functional genomics
Background: Expression array data are used to predict biological functions of uncharacterized genes by comparing their expression profiles to those of characterized genes. While b...
Rafal Kustra, Romy Shioda, Mu Zhu
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BMCBI
2010
133views more  BMCBI 2010»
14 years 9 months ago
Translog, a web browser for studying the expression divergence of homologous genes
Background: Increasing amount of data from comparative genomics, and newly developed technologies producing accurate gene expression data facilitate the study of the expression di...
Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris ...