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» A fast algorithm for computing large Fibonacci numbers
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BMCBI
2010
142views more  BMCBI 2010»
15 years 4 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
270
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BMCBI
2005
306views more  BMCBI 2005»
15 years 4 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
DAC
2008
ACM
16 years 5 months ago
DeFer: deferred decision making enabled fixed-outline floorplanner
In this paper, we present DeFer -- a fast, high-quality and nonstochastic fixed-outline floorplanning algorithm. DeFer generates a non-slicing floorplan by compacting a slicing fl...
Jackey Z. Yan, Chris Chu
BMCBI
2011
14 years 8 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
LCTRTS
2010
Springer
15 years 11 months ago
Analysis and approximation for bank selection instruction minimization on partitioned memory architecture
A large number of embedded systems include 8-bit microcontrollers for their energy efficiency and low cost. Multi-bank memory architecture is commonly applied in 8-bit microcontr...
Minming Li, Chun Jason Xue, Tiantian Liu, Yingchao...