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» A framework for protein and membrane interactions
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IJDMB
2011
85views more  IJDMB 2011»
14 years 6 months ago
Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation
: Classification methods are vital for efficient access of knowledge hidden in biomedical publications. Support vector machines (SVMs) are modern non-parametric deterministic clas...
Tamara Polajnar, Simon Rogers, Mark Girolami
BMCBI
2010
83views more  BMCBI 2010»
14 years 11 months ago
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...
William P. Kelly, Michael P. H. Stumpf
91
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BMCBI
2010
137views more  BMCBI 2010»
14 years 11 months ago
Biana: a software framework for compiling biological interactions and analyzing networks
Background: The analysis and usage of biological data is hindered by the spread of information across multiple repositories and the difficulties posed by different nomenclature sy...
Javier Garcia-Garcia, Emre Guney, Ramon Aragues, J...
ENTCS
2010
97views more  ENTCS 2010»
14 years 9 months ago
A Framework for Modelling and Simulating Networks of Cells
Several complex biological phenomena are to be modelled in terms of a large and dynamic network of compartments, where the interplay between inter-compartment and intra-compartmen...
Sara Montagna, Mirko Viroli
BMCBI
2006
111views more  BMCBI 2006»
14 years 11 months ago
PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions
Background: Many different aspects of cellular signalling, trafficking and targeting mechanisms are mediated by interactions between proteins and peptides. Representative examples...
Tomer Hertz, Chen Yanover