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» A genome alignment algorithm based on compression
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BMCBI
2007
117views more  BMCBI 2007»
14 years 9 months ago
DNA-based watermarks using the DNA-Crypt algorithm
Background: The aim of this paper is to demonstrate the application of watermarks based on DNA sequences to identify the unauthorized use of genetically modified organisms (GMOs) ...
Dominik Heider, Angelika Barnekow
VLDB
2004
ACM
118views Database» more  VLDB 2004»
15 years 2 months ago
On the performance of bitmap indices for high cardinality attributes
It is well established that bitmap indices are efficient for read-only attributes with low attribute cardinalities. For an attribute with a high cardinality, the size of the bitma...
Kesheng Wu, Ekow J. Otoo, Arie Shoshani
ISMB
1996
14 years 10 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
BMCBI
2007
164views more  BMCBI 2007»
14 years 9 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
BMCBI
2006
159views more  BMCBI 2006»
14 years 9 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...