82 search results - page 3 / 17 » A genome alignment algorithm based on compression |
BIBM
2008
IEEE
14 years 22 days ago
2008
IEEE
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
BMCBI
2010
13 years 6 months ago
2010
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
RECOMB
2006
Springer
14 years 6 months ago
2006
Springer
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
BMCBI
2004
13 years 6 months ago
2004
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
CSB
2004
IEEE
13 years 10 months ago
2004
IEEE
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...