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» A geometric database for gene expression data
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NAR
2011
188views Computer Vision» more  NAR 2011»
14 years 4 months ago
NCBI Epigenomics: a new public resource for exploring epigenomic data sets
The Epigenomics database at the National Center for Biotechnology Information (NCBI) is a new resource that has been created to serve as a comprehensive public resource for whole-...
Ian M. Fingerman, Lee McDaniel, Xuan Zhang, Walter...
BMCBI
2005
179views more  BMCBI 2005»
15 years 1 months ago
MARS: Microarray analysis, retrieval, and storage system
Background: Microarray analysis has become a widely used technique for the study of geneexpression patterns on a genomic scale. As more and more laboratories are adopting microarr...
Michael Maurer, Robert Molidor, Alexander Sturn, J...
BMCBI
2008
129views more  BMCBI 2008»
15 years 1 months ago
Motif-directed network component analysis for regulatory network inference
Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
NAR
2007
105views more  NAR 2007»
15 years 1 months ago
Onto-Tools: new additions and improvements in 2006
Onto-Tools is a freely available web-accessible software suite, composed of an annotation database and nine complementary data-mining tools. This article describes a new tool, Ont...
Purvesh Khatri, Calin Voichita, Khalid Kattan, Nad...
SC
2009
ACM
15 years 6 months ago
Cloud technologies for bioinformatics applications
Executing large number of independent tasks or tasks that perform minimal inter-task communication in parallel is a common requirement in many domains. In this paper, we present o...
Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thil...