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RECOMB
2010
Springer
15 years 2 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
APPROX
2009
Springer
153views Algorithms» more  APPROX 2009»
15 years 4 months ago
Average-Case Analyses of Vickrey Costs
We explore the average-case “Vickrey” cost of structures in a random setting: the Vickrey cost of a shortest path in a complete graph or digraph with random edge weights; the V...
Prasad Chebolu, Alan M. Frieze, Páll Melste...
APBC
2007
110views Bioinformatics» more  APBC 2007»
14 years 11 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
FUN
2010
Springer
285views Algorithms» more  FUN 2010»
15 years 2 months ago
An Algorithmic Analysis of the Honey-Bee Game
The Honey-Bee game is a two-player board game that is played on a connected hexagonal colored grid, or in a generalized setting, on a connected graph with colored nodes. In a singl...
Rudolf Fleischer, Gerhard J. Woeginger
COCOON
2003
Springer
15 years 3 months ago
Fault-Hamiltonicity of Product Graph of Path and Cycle
We investigate hamiltonian properties of Pm × Cn, m ≥ 2 and even n ≥ 4, which is bipartite, in the presence of faulty vertices and/or edges. We show that Pm×Cn with n even is...
Jung-Heum Park, Hee-Chul Kim