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» A hybrid genetic search for multiple sequence alignment
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GECCO
2008
Springer
238views Optimization» more  GECCO 2008»
14 years 10 months ago
Using multiple offspring sampling to guide genetic algorithms to solve permutation problems
The correct choice of an evolutionary algorithm, a genetic representation for the problem being solved (as well as their associated variation operators) and the appropriate values...
Antonio LaTorre, José Manuel Peña, V...
BMCBI
2006
108views more  BMCBI 2006»
14 years 9 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
JDA
2008
87views more  JDA 2008»
14 years 9 months ago
Lossless filter for multiple repetitions with Hamming distance
Similarity search in texts, notably in biological sequences, has received substantial attention in the last few years. Numerous filtration and indexing techniques have been create...
Pierre Peterlongo, Nadia Pisanti, Fréd&eacu...
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APBC
2004
108views Bioinformatics» more  APBC 2004»
14 years 11 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
RECOMB
2003
Springer
15 years 10 months ago
A multi-expert system for the automatic detection of protein domains from sequence information
We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
Niranjan Nagarajan, Golan Yona