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BMCBI
2010
102views more  BMCBI 2010»
15 years 5 months ago
Identification of recurrent regions of copy-number variants across multiple individuals
Background: Algorithms and software for CNV detection have been developed, but they detect the CNV regions sample-by-sample with individual-specific breakpoints, while common CNV ...
Teo Shu Mei, Agus Salim, Stefano Calza, Ku Chee Se...
BMCBI
2007
179views more  BMCBI 2007»
15 years 5 months ago
Gene selection with multiple ordering criteria
Background: A microarray study may select different differentially expressed gene sets because of different selection criteria. For example, the fold-change and p-value are two co...
James J. Chen, Chen-An Tsai, ShengLi Tzeng, Chun-H...
RECOMB
2004
Springer
16 years 5 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
15 years 11 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
114
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ISSAC
1994
Springer
96views Mathematics» more  ISSAC 1994»
15 years 9 months ago
Automating the Construction of Stationary Multiple-Point Classes
In this paper, we describe an algorithm to compute arbitrary stationary multiple-point formulas. We report its full implementation in Maple and show some examples matching formula...
Sylvain Petitjean