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ICANNGA
2007
Springer
128views Algorithms» more  ICANNGA 2007»
15 years 3 months ago
A Demonstration of Clustering in Protein Contact Maps for Alpha Helix Pairs
Abstract. The purpose of this work is to demonstrate that it is possible to cluster contact maps for pairs of alpha helices such that each of the clusters corresponds to a group of...
Robert Fraser, Janice I. Glasgow
JCB
2007
92views more  JCB 2007»
14 years 9 months ago
Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
Ilan Gronau, Shlomo Moran
PAMI
2008
197views more  PAMI 2008»
14 years 9 months ago
LEGClust - A Clustering Algorithm Based on Layered Entropic Subgraphs
Hierarchical clustering is a stepwise clustering method usually based on proximity measures between objects or sets of objects from a given data set. The most common proximity meas...
Jorge M. Santos, Joaquim Marques de Sá, Lu&...
ICSM
2009
IEEE
14 years 7 months ago
Decomposing object-oriented class modules using an agglomerative clustering technique
Software can be considered a live entity, as it undergoes many alterations throughout its lifecycle. Furthermore, developers do not usually retain a good design in favor of adding...
Marios Fokaefs, Nikolaos Tsantalis, Alexander Chat...
CBMS
2008
IEEE
15 years 4 months ago
A New Path Length Measure Based on GO for Gene Similarity with Evaluation using SGD Pathways
We propose a new method for measuring the semantic similarity of genes based on path length between their annotation terms in the Gene Ontology. Our method applies an exponential ...
Anurag Nagar, Hisham Al-Mubaid