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ALENEX
2007
105views Algorithms» more  ALENEX 2007»
15 years 2 months ago
ScrewBox: a Randomized Certifying Graph-Non-Isomorphism Algorithm
We present a novel randomized approach to the graph isomorphism problem. Our algorithm aims at solving difficult instances by producing randomized certificates for non-isomorphis...
Martin Kutz, Pascal Schweitzer
VLSISP
2008
140views more  VLSISP 2008»
15 years 1 months ago
Regular Expression Matching in Reconfigurable Hardware
In this paper we describe a regular expression pattern matching approach for reconfigurable hardware. Following a Non-deterministic Finite Automata direction, we introduce three ne...
Ioannis Sourdis, João Bispo, João M....
BMCBI
2007
107views more  BMCBI 2007»
15 years 1 months ago
A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL
Background: Identity by descent (IBD) matrix estimation is a central component in mapping of Quantitative Trait Loci (QTL) using variance component models. A large number of algor...
Francois Besnier, Örjan Carlborg
BMCBI
2007
128views more  BMCBI 2007»
15 years 1 months ago
A Bayesian nonparametric method for prediction in EST analysis
Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
Antonio Lijoi, Ramsés H. Mena, Igor Prü...
BMCBI
2007
146views more  BMCBI 2007»
15 years 1 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...