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ALGORITHMICA
2005
108views more  ALGORITHMICA 2005»
14 years 9 months ago
Key-Independent Optimality
A new form of optimality for comparison based static dictionaries is introduced. This type of optimality, keyindependent optimality, is motivated by applications that assign key v...
John Iacono
BMCBI
2006
107views more  BMCBI 2006»
14 years 9 months ago
A reinforced merging methodology for mapping unique peptide motifs in members of protein families
Background: Members of a protein family often have highly conserved sequences; most of these sequences carry identical biological functions and possess similar three-dimensional (...
Hao-Teng Chang, Tun-Wen Pai, Tan-Chi Fan, Bo-Han S...
BMCBI
2005
119views more  BMCBI 2005»
14 years 9 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
ASAP
2000
IEEE
90views Hardware» more  ASAP 2000»
15 years 2 months ago
Subword Permutation Instructions for Two-Dimensional Multimedia Processing in MicroSIMD Architectures
MicroSIMD architectures incorporating subword parallelism are very efficient for application-specific media processors as well as for fast multimedia information processing in gen...
Ruby B. Lee