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» A novel spectral coding in a large graph database
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CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
15 years 1 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 3 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
ICDM
2009
IEEE
197views Data Mining» more  ICDM 2009»
14 years 7 months ago
A Linear-Time Graph Kernel
The design of a good kernel is fundamental for knowledge discovery from graph-structured data. Existing graph kernels exploit only limited information about the graph structures bu...
Shohei Hido, Hisashi Kashima
WAW
2004
Springer
178views Algorithms» more  WAW 2004»
15 years 2 months ago
Communities Detection in Large Networks
We develop an algorithm to detect community structure in complex networks. The algorithm is based on spectral methods and takes into account weights and links orientations. Since t...
Andrea Capocci, Vito Domenico Pietro Servedio, Gui...