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BMCBI
2007
109views more  BMCBI 2007»
13 years 6 months ago
A domain-based approach to predict protein-protein interactions
Background: Knowing which proteins exist in a certain organism or cell type and how these proteins interact with each other are necessary for the understanding of biological proce...
Mudita Singhal, Haluk Resat
BMCBI
2010
189views more  BMCBI 2010»
13 years 6 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
BMCBI
2007
122views more  BMCBI 2007»
13 years 6 months ago
TAP score: torsion angle propensity normalization applied to local protein structure evaluation
Background: Experimentally determined protein structures may contain errors and require validation. Conformational criteria based on the Ramachandran plot are mainly used to disti...
Silvio C. E. Tosatto, Roberto Battistutta
ICFCA
2009
Springer
13 years 4 months ago
A Concept Lattice-Based Kernel for SVM Text Classification
Abstract. Standard Support Vector Machines (SVM) text classification relies on bag-of-words kernel to express the similarity between documents. We show that a document lattice can ...
Claudio Carpineto, Carla Michini, Raffaele Nicolus...
BMCBI
2008
118views more  BMCBI 2008»
13 years 6 months ago
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Background: With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few appro...
Grace S. Shieh, Chung-Ming Chen, Ching-Yun Yu, Jui...