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» A parallel search algorithm for CLNS addition optimization
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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 7 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
96
Voted
PPSN
1998
Springer
15 years 5 months ago
Methods to Evolve Legal Phenotypes
Many optimization problems require the satisfaction of constraints in addition to their objectives. When using an evolutionary algorithm to solve such problems, these constraints c...
Tina Yu, Peter J. Bentley
114
Voted
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
CCE
2008
15 years 26 days ago
Multiobjective optimization of multipurpose batch plants using superequipment class concept
We present a novel approach for solving different design problems related to single products in multipurpose batch plants: the selection of one production line out of several avai...
Andrej Mosat, Laurent Cavin, Ulrich Fischer 0002, ...
112
Voted
SIGMOD
2009
ACM
161views Database» more  SIGMOD 2009»
15 years 7 months ago
Dependency-aware reordering for parallelizing query optimization in multi-core CPUs
The state of the art commercial query optimizers employ cost-based optimization and exploit dynamic programming (DP) to find the optimal query execution plan (QEP) without evalua...
Wook-Shin Han, Jinsoo Lee