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» A polyhedral approach to RNA sequence structure alignment
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ICPP
2006
IEEE
15 years 3 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
BIOINFORMATICS
2007
33views more  BIOINFORMATICS 2007»
14 years 9 months ago
Murlet: a practical multiple alignment tool for structural RNA sequences
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi ...
BMCBI
2008
62views more  BMCBI 2008»
14 years 9 months ago
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi ...
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BIOINFORMATICS
2006
73views more  BIOINFORMATICS 2006»
14 years 9 months ago
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments
Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai
RECOMB
2006
Springer
15 years 10 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna