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» A polyhedral approach to sequence alignment problems
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CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 1 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BMCBI
2011
14 years 1 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
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SIBGRAPI
2008
IEEE
15 years 4 months ago
Synchronizing Video Cameras with Non-overlapping Fields of View
This paper describes a method to estimate the temporal alignment between N unsynchronized video sequences captured by cameras with non-overlapping fields of view. The sequences a...
Darlan N. Brito, Flávio L. C. Pádua,...
RECOMB
2002
Springer
15 years 10 months ago
Revealing protein structures: a new method for mapping antibody epitopes
A recent idea for determining the three-dimensional structure of a protein uses antibody recognition of surface structure and random peptide libraries to map antibody epitope comb...
Brendan Mumey, Brian W. Bailey, Edward A. Dratz
BMCBI
2008
109views more  BMCBI 2008»
14 years 9 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger