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» A scalable algorithm for clustering protein sequences
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SSDBM
2003
IEEE
123views Database» more  SSDBM 2003»
13 years 11 months ago
MoBIoS: A Metric-Space DBMS to Support Biological Discovery
MoBIoS is a specialized database management system whose storage manager is based on metric-space indexing, and whose query language entails biological data types. When relational...
Daniel P. Miranker, Weijia Xu, Rui Mao
BMCBI
2008
132views more  BMCBI 2008»
13 years 6 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
14 years 6 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
BMCBI
2010
156views more  BMCBI 2010»
13 years 6 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
KDD
2005
ACM
153views Data Mining» more  KDD 2005»
14 years 6 months ago
Using retrieval measures to assess similarity in mining dynamic web clickstreams
While scalable data mining methods are expected to cope with massive Web data, coping with evolving trends in noisy data in a continuous fashion, and without any unnecessary stopp...
Olfa Nasraoui, Cesar Cardona, Carlos Rojas