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» A simple and fast heuristic for protein structure comparison
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BMCBI
2005
130views more  BMCBI 2005»
14 years 9 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
DASFAA
2009
IEEE
195views Database» more  DASFAA 2009»
15 years 4 months ago
The XMLBench Project: Comparison of Fast, Multi-platform XML libraries
The XML technologies have brought a lot of new ideas and abilities in the field of information management systems. Nowadays, XML is used almost everywhere: from small configurati...
Suren Chilingaryan
CIBCB
2006
IEEE
15 years 3 months ago
A Stochastic model to estimate the time taken for Protein-Ligand Docking
Abstract— Quantum mechanics and molecular dynamic simulation provide important insights into structural configurations and molecular interaction data today. To extend this atomi...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
BMCBI
2006
80views more  BMCBI 2006»
14 years 9 months ago
Quantification of the variation in percentage identity for protein sequence alignments
Background: Percentage Identity (PID) is frequently quoted in discussion of sequence alignments since it appears simple and easy to understand. However, although there are several...
G. P. S. Raghava, Geoffrey J. Barton
COCOON
2009
Springer
15 years 4 months ago
Determination of Glycan Structure from Tandem Mass Spectra
Glycans are molecules made from simple sugars that form complex tree structures. Glycans constitute one of the most important protein modifications, and identification of glycans...
Sebastian Böcker, Birte Kehr, Florian Rasche