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» A stochastic particle-based biological system simulator
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MCS
2008
Springer
14 years 9 months ago
Error analysis of a stochastic immersed boundary method incorporating thermal fluctuations
A stochastic numerical scheme for an extended immersed boundary method which incorporates thermal fluctuations for the simulation of microscopic biological systems consisting of fl...
Paul J. Atzberger, Peter R. Kramer
JUCS
2010
215views more  JUCS 2010»
14 years 4 months ago
A Multidisciplinary Survey of Computational Techniques for the Modelling, Simulation and Analysis of Biochemical Networks
: All processes of life are controlled by networks of interacting biochemical components. The purpose of modelling these networks is manifold. From a theoretical point of view it a...
James Decraene, Thomas Hinze
CN
2008
98views more  CN 2008»
14 years 9 months ago
Description and simulation of dynamic mobility networks
During the last decade, the study of large scale complex networks has attracted a substantial amount of attention and works from several domains: sociology, biology, computer scie...
Antoine Scherrer, Pierre Borgnat, Eric Fleury, Jea...
CDC
2008
IEEE
15 years 4 months ago
Retroactivity attenuation in transcriptional networks: Design and analysis of an insulation device
— Retroactivity is a parasitic phenomenon that changes the desired input/output response of a system when it is connected to “downstream” systems. Downstream and upstream ref...
Domitilla Del Vecchio, Shridhar Jayanthi
BMCBI
2008
95views more  BMCBI 2008»
14 years 9 months ago
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
Background: Large biological data sets, such as expression profiles, benefit from reduction of random noise. Principal component (PC) analysis has been used for this purpose, but ...
Joseph W. Foley, Fumiaki Katagiri