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» A stochastic particle-based biological system simulator
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PACT
2007
Springer
15 years 3 months ago
A Stochastic Semantics for BioAmbients
We consider BioAmbients, a calculus for specifying biological entities and for simulating and analysing their behaviour. We extend BioAmbients to take quantitative information into...
Linda Brodo, Pierpaolo Degano, Corrado Priami
CIBCB
2007
IEEE
15 years 3 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
ACRI
2006
Springer
15 years 3 months ago
CA Simulation of Biological Evolution in Genetic Hyperspace
Abstract. Realistic simulation of biological evolution by necessity requires simplification and reduction in the dimensionality of the corresponding dynamic system. Even when this...
Michael A. Saum, Sergey Gavrilets
WEBI
2010
Springer
14 years 7 months ago
Stochastic Simulation of Web Users
A biologically inspired cognitive model is presented for human decision making and applied to the simulation of the web user. The model is based on the Neurophysiology description ...
Pablo E. Román, Juan D. Velásquez
LSGRID
2004
Springer
15 years 2 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...