The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
We investigate the universal characteristics of the simulated time horizon of the basic conservative parallel algorithm when implemented on regular lattices. This technique [1, 2]...
G. Korniss, M. A. Novotny, A. K. Kolakowska, H. Gu...
An agent-based approach is used to explain the formation of vortex swarms in biological systems. The dynamics of the multiagent system is described by 3N coupled equations, modeli...
We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π-calculus. It supports higher level modeling via multi-profile con...
We demonstrate a novel simulation technique for analysing large stochastic process algebra models, applying this to a secure electronic voting system example. By approximating the...