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» A stochastic particle-based biological system simulator
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81
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ICCMS
2009
118views more  ICCMS 2009»
14 years 7 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
78
Voted
SAC
2002
ACM
14 years 9 months ago
Statistical properties of the simulated time horizon in conservative parallel discrete-event simulations
We investigate the universal characteristics of the simulated time horizon of the basic conservative parallel algorithm when implemented on regular lattices. This technique [1, 2]...
G. Korniss, M. A. Novotny, A. K. Kolakowska, H. Gu...
ECAL
2003
Springer
15 years 2 months ago
Multi-agent Model of Biological Swarming
An agent-based approach is used to explain the formation of vortex swarms in biological systems. The dynamics of the multiagent system is described by 3N coupled equations, modeli...
Robert Mach, Frank Schweitzer
81
Voted
AB
2007
Springer
15 years 3 months ago
A Stochastic Pi Calculus for Concurrent Objects
We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π-calculus. It supports higher level modeling via multi-profile con...
Céline Kuttler, Cédric Lhoussaine, J...
ENTCS
2006
151views more  ENTCS 2006»
14 years 9 months ago
Stochastic Simulation Methods Applied to a Secure Electronic Voting Model
We demonstrate a novel simulation technique for analysing large stochastic process algebra models, applying this to a secure electronic voting system example. By approximating the...
Jeremy T. Bradley, Stephen T. Gilmore