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» A structural alignment kernel for protein structures
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75
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BMCBI
2007
112views more  BMCBI 2007»
14 years 9 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...
66
Voted
ICIP
2007
IEEE
15 years 4 months ago
Retina Layer Segmentation and Spatial Alignment of Antibody Expression Levels
The expression levels of rod opsin and glial fibrillary acidic protein (GFAP) capture important structural changes in the retina during injury and recovery. Quantitatively measur...
Nhat Vu, Pratim Ghosh, B. S. Manjunath
ICML
2010
IEEE
14 years 10 months ago
Robust Formulations for Handling Uncertainty in Kernel Matrices
We study the problem of uncertainty in the entries of the Kernel matrix, arising in SVM formulation. Using Chance Constraint Programming and a novel large deviation inequality we ...
Sahely Bhadra, Sourangshu Bhattacharya, Chiranjib ...
BMCBI
2011
14 years 1 months ago
Conotoxin Protein Classification Using Free Scores of Words and Support Vector Machines
Background: Conotoxin has been proven to be effective in drug design and could be used to treat various disorders such as schizophrenia, neuromuscular disorders and chronic pain. ...
Nazar Zaki, Stefan Wolfsheimer, Grégory Nue...
BMCBI
2004
196views more  BMCBI 2004»
14 years 9 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar