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» A structural alignment kernel for protein structures
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NAR
2007
120views more  NAR 2007»
14 years 9 months ago
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
TOPOFIT-DB (T-DB) is a public web-based database of protein structural alignments based on the TOPOFIT method, providing a comprehensive resource for comparative analysis of prote...
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyi...
RECOMB
2009
Springer
15 years 10 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu
ALMOB
2008
82views more  ALMOB 2008»
14 years 9 months ago
Protein sequence and structure alignments within one framework
Background: Protein structure alignments are usually based on very different techniques to sequence alignments. We propose a method which treats sequence, structure and even combi...
Gundolf Schenk, Thomas Margraf, Andrew E. Torda
55
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APBC
2007
14 years 11 months ago
Protein Structure-Structure Alignment with Discrete Fr'echet Distance
Minghui Jiang, Ying Xu, Binhai Zhu