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» A structural keystone for drug design
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BMCBI
2007
181views more  BMCBI 2007»
14 years 11 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller
99
Voted
BMCBI
2010
123views more  BMCBI 2010»
14 years 11 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
15 years 6 months ago
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
Background: Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screeni...
Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald ...
128
Voted
CIKM
2006
Springer
15 years 3 months ago
Structure-based querying of proteins using wavelets
The ability to retrieve molecules based on structural similarity has use in many applications, from disease diagnosis and treatment to drug discovery and design. In this paper, we...
Keith Marsolo, Srinivasan Parthasarathy, Kotagiri ...
PARA
1998
Springer
15 years 3 months ago
Technologies for Teracomputing: A European Option
Abstract. Ahardware and software environment with performance above 1 Tera ops (teracomputing) is presently required to face the leading computational challenges not only in fundam...
Agostino Mathis