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SIMVIS
2003
15 years 1 months ago
An Experimental Study of the Behaviour of the Proxel-Based Simulation Algorithm
The paradigm of the proxel ("probability element") was recently introduced in order to provide a new algorithmic approach to analysing discrete-state stochastic models s...
Sanja Lazarova-Molnar, Graham Horton
BMCBI
2008
78views more  BMCBI 2008»
14 years 12 months ago
Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
Background: Protein-protein interaction networks are commonly sampled using yeast two hybrid approaches. However, whether topological information reaped from these experimentallym...
Ling Yang, Thomas M. Vondriska, Zhangang Han, W. R...
79
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BMCBI
2008
102views more  BMCBI 2008»
14 years 12 months ago
Monitoring the evolutionary aspect of the Gene Ontology to enhance predictability and usability
Background: Much effort is currently made to develop the Gene Ontology (GO). Due to the dynamic nature of information it addresses, GO undergoes constant updates whose results are...
Jong C. Park, Tak-eun Kim, Jinah Park
BMCBI
2006
239views more  BMCBI 2006»
14 years 12 months ago
Applying dynamic Bayesian networks to perturbed gene expression data
Background: A central goal of molecular biology is to understand the regulatory mechanisms of gene transcription and protein synthesis. Because of their solid basis in statistics,...
Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek...
CORR
2007
Springer
144views Education» more  CORR 2007»
14 years 12 months ago
Optimization of Information Rate Upper and Lower Bounds for Channels with Memory
—We consider the problem of minimizing upper bounds and maximizing lower bounds on information rates of stationary and ergodic discrete-time channels with memory. The channels we...
Parastoo Sadeghi, Pascal O. Vontobel, Ramtin Shams