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BMCBI
2008
146views more  BMCBI 2008»
14 years 10 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
RECOMB
2008
Springer
15 years 10 months ago
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information
High-accuracy protein structure modeling demands accurate and very fast side chain prediction since such a procedure must be repeatedly called at each step of structure refinement....
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
MAGS
2007
168views more  MAGS 2007»
14 years 10 months ago
Agent-based protein structure prediction
A protein is identified by a finite sequence of amino acids, each of them chosen from a set of 20 elements. The Protein Structure Prediction Problem is the problem of predicting...
Luca Bortolussi, Agostino Dovier, Federico Fogolar...
112
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CEC
2011
IEEE
13 years 10 months ago
Comparing alternative energy functions for the HP model of protein structure prediction
Abstract—Protein structure prediction is the problem of finding the functional conformation of a protein given only its amino uence. The HP lattice model is an abstract formulat...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
ER
2007
Springer
163views Database» more  ER 2007»
15 years 4 months ago
Know your Limits: Enhanced XML Modeling with Cardinality Constraints
XML Schema supports the specification of occurrence constraints by declaring values for its min/maxOccurs attributes. These constraints are structural in the sense that they rest...
Sebastian Link, Thu Trinh