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» A universe of binding and computation
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BMCBI
2005
201views more  BMCBI 2005»
14 years 11 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
CEC
2008
IEEE
14 years 12 months ago
Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability
Abstract-- Understanding the evolvability of simple differentiating multicellular systems is a fundamental problem in the biology of genetic regulatory networks and in computationa...
Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J...
NAR
2011
204views Computer Vision» more  NAR 2011»
14 years 2 months ago
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins
The stability, localization and translation rate of mRNAs are regulated by a multitude of RNAbinding proteins (RBPs) that find their targets directly or with the help of guide RNA...
Mohsen Khorshid, Christoph Rodak, Mihaela Zavolan
WWW
2005
ACM
16 years 14 days ago
XQuery containment in presence of variable binding dependencies
Semantic caching is an important technology for improving the response time of future user queries specified over remote servers. This paper deals with the fundamental query conta...
Li Chen, Elke A. Rundensteiner
ICLP
2009
Springer
16 years 13 days ago
A Tabling Implementation Based on Variables with Multiple Bindings
Suspension-based tabling systems have to save and restore computation states belonging to OR branches. Stack freezing combined with (forward) trailing is among the better-known imp...
Pablo Chico de Guzmán, Manuel Carro, Manuel...