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» ARTS: alignment of RNA tertiary structures
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ECCB
2005
IEEE
13 years 12 months ago
ARTS: alignment of RNA tertiary structures
Oranit Dror, Ruth Nussinov, Haim J. Wolfson
SSDBM
2007
IEEE
131views Database» more  SSDBM 2007»
14 years 16 days ago
Mining RNA Tertiary Motifs with Structure Graphs
We present a novel application of graph database mining to identify tertiary motifs in RNA structures. In od, we abstract an RNA molecule as a labeled graph and use a frequent sub...
Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010
BMCBI
2006
121views more  BMCBI 2006»
13 years 6 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
BMCBI
2008
109views more  BMCBI 2008»
13 years 6 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
CORR
2006
Springer
159views Education» more  CORR 2006»
13 years 6 months ago
Structural Alignments of pseudo-knotted RNA-molecules in polynomial time
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A, C, G, U}. The higher structure i...
Michael Brinkmeier