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CEC
2010
IEEE
14 years 8 months ago
Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle
High-throughput analytical techniques such as nuclear magnetic resonance, protein kinase phosphorylation, and mass spectroscopic methods generate time dense profiles of metabolites...
Prospero C. Naval, Luis G. Sison, Eduardo R. Mendo...
ICONIP
2007
15 years 3 months ago
Automatic Factorization of Biological Signals Measured by Fluorescence Correlation Spectroscopy Using Non-negative Matrix Factor
− This paper proposes an automatic factorization method of the biological signals measured by Fluorescence Correlation Spectroscopy (FCS). Since the signals are composed from sev...
Kenji Watanabe, Takio Kurita
NAR
2006
119views more  NAR 2006»
15 years 1 months ago
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
Johannes Söding, Michael Remmert, Andreas Bie...
CIBCB
2005
IEEE
15 years 3 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
APBC
2007
110views Bioinformatics» more  APBC 2007»
15 years 3 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu