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BMCBI
2007
130views more  BMCBI 2007»
15 years 2 months ago
A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
SISAP
2010
IEEE
135views Data Mining» more  SISAP 2010»
15 years 9 days ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...
JCB
2006
114views more  JCB 2006»
15 years 1 months ago
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
ICDE
2009
IEEE
1081views Database» more  ICDE 2009»
17 years 1 months ago
Modeling and Integrating Background Knowledge in Data Anonymization
Recent work has shown the importance of considering the adversary’s background knowledge when reasoning about privacy in data publishing. However, it is very difficult for the d...
Tiancheng Li, Ninghui Li, Jian Zhang
WSC
1998
15 years 3 months ago
Experience Using the IBM Supply Chain Simulator
The IBM Supply Chain Simulator (SCS) is a software tool that can help a company or a group of companies make strategic business decisions about the design and operation of its sup...
Sugato Bagchi, Stephen J. Buckley, Markus Ettl, Gr...