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BMCBI
2010
120views more  BMCBI 2010»
15 years 1 months ago
Optimal contact definition for reconstruction of Contact Maps
Background: Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being pref...
Jose M. Duarte, Rajagopal Sathyapriya, Henning Ste...
WSC
2007
15 years 3 months ago
Expecting the unexpected: representing, reasoning about, and assessing construction project contingencies
Planning, scheduling and effective management of contingencies are crucial for the successful management of construction projects. In this paper we explore a mathematical represen...
G. Ryan Anderson, Nilufer Onder, Amlan Mukherjee
LION
2009
Springer
135views Optimization» more  LION 2009»
15 years 8 months ago
Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment
We present a new knowledge-based Model Quality Assessment Program (MQAP) at the residue level which evaluates single protein structure models. We use a tree representation of the ...
Alberto J. M. Martin, Alessandro Vullo, Gianluca P...
ICML
2009
IEEE
16 years 2 months ago
A Bayesian approach to protein model quality assessment
Given multiple possible models b1, b2, . . . bn for a protein structure, a common sub-task in in-silico Protein Structure Prediction is ranking these models according to their qua...
Hetunandan Kamisetty, Christopher James Langmead
BMCBI
2010
139views more  BMCBI 2010»
15 years 1 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...