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AIPS
1994
15 years 2 months ago
Arguing about Plans: Plan Representation and Reasoning for Mixed-initiative Planning
We consider the problem of representing plans for mixed-initiative planning, where several participants cooperate to develop plans. We claim that in such an environment, a crucial...
George Ferguson, James F. Allen
ISMB
1998
15 years 2 months ago
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
BMCBI
2008
133views more  BMCBI 2008»
15 years 1 months ago
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Background: Reliable prediction of antibody, or B-cell, epitopes remains challenging yet highly desirable for the design of vaccines and immunodiagnostics. A correlation between a...
Julia V. Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicho...
IPPS
2009
IEEE
15 years 8 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
FUIN
2008
147views more  FUIN 2008»
15 years 1 months ago
A Basic Logic for Reasoning about Connector Reconfiguration
Abstract. Software systems evolve over time. From a component-based software engineering perspective, this means that either the components of the system need to change, or, if com...
Dave Clarke