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259
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POPL
2004
ACM
16 years 4 months ago
Parsing expression grammars: a recognition-based syntactic foundation
For decades we have been using Chomsky's generative system of grammars, particularly context-free grammars (CFGs) and regular expressions (REs), to express the syntax of prog...
Bryan Ford
RECOMB
2006
Springer
16 years 4 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
173
Voted
RECOMB
2004
Springer
16 years 4 months ago
Comparing in situ mRNA expression patterns of drosophila embryos
In situ staining of a target mRNA at several time points during the development of a D. melanogaster embryo gives one a detailed spatio-temporal view of the expression pattern of ...
Hanchuan Peng, Eugene W. Myers
127
Voted
RECOMB
2002
Springer
16 years 4 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
139
Voted
ICALP
2009
Springer
16 years 4 months ago
Functional Monitoring without Monotonicity
The notion of distributed functional monitoring was recently introduced by Cormode, Muthukrishnan and Yi [CMY08] to initiate a formal study of the communication cost of certain fu...
Chrisil Arackaparambil, Joshua Brody, Amit Chakrab...
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