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DAGSTUHL
2006
15 years 7 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards
BMCBI
2010
163views more  BMCBI 2010»
15 years 6 months ago
Integration of open access literature into the RCSB Protein Data Bank using BioLit
Background: Biological data have traditionally been stored and made publicly available through a variety of on-line databases, whereas biological knowledge has traditionally been ...
Andreas Prlic, Marco A. Martinez, Dimitris Dimitro...
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
JSYML
2008
95views more  JSYML 2008»
15 years 6 months ago
Examples of non-locality
free but not Whitehead Abelian groups to construct Abstract Elementary Classes (AEC) which satisfy the amalgamation property but fail various conditions on the locality of Galois-...
John T. Baldwin, Saharon Shelah
ICFP
2009
ACM
16 years 6 months ago
Non-parametric parametricity
Type abstraction and intensional type analysis are features seemingly at odds--type abstraction is intended to guarantee parametricity and representation independence, while type ...
Georg Neis, Derek Dreyer, Andreas Rossberg