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» Accelerating Smith-Waterman Algorithm for Biological Databas...
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95
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BMCBI
2008
211views more  BMCBI 2008»
14 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
46
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IEICET
2010
78views more  IEICET 2010»
14 years 8 months ago
Accelerating Smith-Waterman Algorithm for Biological Database Search on CUDA-Compatible GPUs
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
BCB
2010
156views Bioinformatics» more  BCB 2010»
14 years 4 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...