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CIBCB
2007
IEEE
15 years 1 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
15 years 1 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
SDM
2004
SIAM
207views Data Mining» more  SDM 2004»
14 years 11 months ago
BAMBOO: Accelerating Closed Itemset Mining by Deeply Pushing the Length-Decreasing Support Constraint
Previous study has shown that mining frequent patterns with length-decreasing support constraint is very helpful in removing some uninteresting patterns based on the observation t...
Jianyong Wang, George Karypis
BMCBI
2008
83views more  BMCBI 2008»
14 years 9 months ago
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
Akito Taneda
PERCOM
2005
ACM
15 years 9 months ago
The Problem of Bluetooth Pollution and Accelerating Connectivity in Bluetooth Ad-Hoc Networks
This paper investigates a real-world problem termed "Bluetooth (BTH) pollution", which is expected to become commonplace as the mass deployment of BTH devices continues....
Somil Asthana, Dimitris N. Kalofonos