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» Acceleration of the EM algorithm
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128
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IPPS
2009
IEEE
15 years 10 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
138
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HPCC
2007
Springer
15 years 9 months ago
Software Pipelining for Packet Filters
Packet filters play an essential role in traffic management and security management on the Internet. In order to create software-based packet filters that are fast enough to work...
Yoshiyuki Yamashita, Masato Tsuru
120
Voted
CVPR
2006
IEEE
15 years 9 months ago
Active Graph Cuts
This paper adds a number of novel concepts into global s/t cut methods improving their efficiency and making them relevant for a wider class of applications in vision where algor...
Olivier Juan, Yuri Boykov
136
Voted
DATE
2006
IEEE
195views Hardware» more  DATE 2006»
15 years 9 months ago
Application specific instruction processor based implementation of a GNSS receiver on an FPGA
In this paper the concept of a reconfigurable hardware macro to be used as a generic building block in lowpower, low-cost SoC for multioperable GNSS positioning is described, feat...
Götz Kappen, Tobias G. Noll
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
15 years 9 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...