The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...
We describe PReMod, a new database of genomewide cis-regulatory module (CRM) predictions for both the human and the mouse genomes. The prediction algorithm, described previously i...
Vincent Ferretti, Christian Poitras, Dominique Ber...
Short, linear motifs (SLiMs) play a critical role in many biological processes, particularly in protein–protein interactions. Overrepresentation of convergent occurrences of mot...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...
Learning structured representations has emerged as an important problem in many domains, including document and Web data mining, bioinformatics, and image analysis. One approach t...
Anon Plangprasopchok, Kristina Lerman, Lise Getoor
Supporting legacy applications when the database schema evolves represents a long-standing challenge of practical and theoretical importance. Recent work has produced algorithms a...
Carlo Curino, Hyun Jin Moon, Alin Deutsch, Carlo Z...