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» Accuracy in Predicting Secondary Structure of Ionic Channels
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BMCBI
2010
97views more  BMCBI 2010»
14 years 9 months ago
SeqRate: sequence-based protein folding type classification and rates prediction
Background: Protein folding rate is an important property of a protein. Predicting protein folding rate is useful for understanding protein folding process and guiding protein des...
Guan Ning Lin, Zheng Wang, Dong Xu, Jianlin Cheng
ADC
2007
Springer
125views Database» more  ADC 2007»
15 years 3 months ago
Building a Disordered Protein Database: A Case Study in Managing Biological Data
A huge diversity of biological databases is available via the Internet, but many of these databases have been developed in an ad hoc manner rather than in accordance with any data...
Arran D. Stewart, Xiuzhen Zhang
BMCBI
2006
152views more  BMCBI 2006»
14 years 9 months ago
A two-stage approach for improved prediction of residue contact maps
Background: Protein topology representations such as residue contact maps are an important intermediate step towards ab initio prediction of protein structure. Although improvemen...
Alessandro Vullo, Ian Walsh, Gianluca Pollastri
100
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CIBCB
2007
IEEE
15 years 1 months ago
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks
The accurate prediction of enzyme catalytic sites remains an open problem in bioinformatics. Recently, several structure-based methods have become popular; however, few robust seq...
Swati Pande, Amar Raheja, Dennis R. Livesay
BMCBI
2004
196views more  BMCBI 2004»
14 years 9 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar